Hi,
For your info, I have a 2006 Mac Pro with a PC only 8800GTS card, and it works fine as a Windows/Linux machine.
You might want to keep a Mac OS X installation somewhere, to be able to do firmware updates, if any is available.
1/ using a EFI/Mac OS X card, install rEFIt, and configure it to boot your legacy OS first
2/ remove the EFI/OS X card, install your PC only card.
3/ reboot. The screen will stay blank during the EFI phase, but the PC vgabios will get executed once rEFIt boots the bootcamp EFI App
You can then chainload to a BIOS GRUB or LILO, to have a second boot selector, to choose among your different BIOS based OSes
If a firmware update is available for your machine, just plug the EFI/Mac OS card instead of the PC one, and reboot to Mac OS X through rEFIt's menu