No -- they don't. Well, I know that superduper does not, and I suspect that Carbon Copy Cloner (CCC) does not either. Basically what all of these utilities do is to to format the drive, then just copy, file by file, the contents of your hard drive until it's a clone. The way Os X is set up, and the way most unixes are set up, this is a practical and easy way to make replicas. Windows isn't easy this way -- if you take a system hard drive and just copy the files over manually, good luck getting the sucker to boot. I'm not positive about this, but I've always assumed this has to do with some combination of NTFS and the way the windows registry works. I'm not sure how Acronis does it, but most of the windows cloning software I've seen actually does a sector by sector copy of the one drive to the other, which is physically copying the filesystem as well, and then you would later get windows to expand the system partition to take up the entire disk.
You could potentially do this same kind of thing, a sector by sector copy from one drive to the other, on your mac as well, and that would indeed capture all of both OS partitions. I don't know how well it'd work, and neither of the tools I mentioned will do that for you. My guess is that you'd be best served doing something like
1) clone the Os X partition of the drive with superduper to the new drive
2) install the drive into your macbook pro
3) run boot camp and set up your windows partition
4) run acronis and clone your old windows partition from the usb enclosure to the internal drive.
Others may have better ideas, or know of tools that I don't. The superduper forums, or FAQ, does answer this question, and might have more information as well.
Thanks, I haven't got a firm answer for this one more question:
Does carbon copy cloner or superduper also clone what I have on my bootcamp partition? I mean, which one of them, or both of them clone the hard drive block by block no matter what format it is?
