I understand your point, but context still remains the determining factor. For example:
Manager: "I don't know if your religious or go to church or anything, but we are closed on Sundays because our founder and CEO has made that decision based on his own religious beliefs. I wanted to make sure you were aware of that in applying for a position here if it is an issue for you regarding hours or availability."
Applicant tells a friend later: "Man that manager asked me if I was a religious person and said they were a religious company. I don't think that's right..."
Misunderstanding and miscommunication is just part of being a human being. It happens to all of us. Not defending Chick-fil-a, just saying don't jump to conclusions.