App Thinning is the reason apps aren't syncing to iTunes from iOS 9.
If you haven't noticed already, when you update an app Over-the-Air it doesn't transfer the IPA file to iTunes even if it's not a thinned version of the app.
If you haven't noticed already, when you update an app Over-the-Air it doesn't transfer the IPA file to iTunes even if it's not a thinned version of the app.
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