I've found that the issue is directly related to graphics switching. I attempted to take a screen recording while my wallpaper preferences panel was up and, as soon as the OS switched to the discrete GPU, the wallpaper changed selections. I have now unified the selection under both GPUs, but it is still quite an odd bug.
Not sure if it will solve it for everyone, but it's worth a shot if you're suffering from the issue.
Not sure if it will solve it for everyone, but it's worth a shot if you're suffering from the issue.