Because doing that would mean sharing bandwidth that doesn't need to be shared. If you want to put an extra SSD somewhere on Anandetach's diagram, the sensible place to put it is on Thunderbolt ports. Given that there's a total of 7.5 GB/s of bandwidth allocated to Thunderbolt connections, it makes no sense to have a second SSD sharing bandwidth that's already allocated elsewhere, even on on a system that has no external devices plugged in. It makes far more sense to put it somewhere where it's only going to be sharing bandwidth in rare cases where there are lots of other TB2 devices connected.
So, you want to route the unused PCIe x4 lanes from the existing PLX switch on the IO board to an SSD on the 2nd GPU card, and borrow bandwidth from the T-Bolt array rather than the 2nd GPU.
Fine. At least you're acknowledging the "potential" for a 2nd SSD.
We'll just have to wait and see which solution the Apple engineers choose for the 2nd version of the new Mini Pro to add the second internal SSD. In the end it will be determined by compromises - whether it's easier/cheaper to route two lanes (or four) from the IO daughtercard through the bottom motherboard to the GPU daughtercard, or easier/cheaper to put a PCIe switch on the motherboard or GPU daughtercard - and where it makes the most sense to oversubscribe PCIe bandwidth.
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Over-subscription is not a bad thing - it's a very useful and necessary engineering compromise.
I recently retired three Cisco Catalyst 4506 switches - each cost me about $150K. I bought them early in the millennium because I needed about 700 GbE ports - and the Cat4 switches were industry leading at only a few hundred dollars per port. (How many of you have tossed a half million dollars of computer gear into the e-waste bin?)
One problem was, however, that they were oversubscribed. They had port groups of 8 GbE ports that had 1 GbE bandwidth for the group of 8 ports - 8 to 1 oversubscription.
It was mostly a non-issue, though, since most network traffic is bursty and it was seldom the case that adjacent ports would be busy. (When doing cluster work, though, we'd rewire the ports so that no two ports in the cluster shared bandwidth - a pain in the butt.)
The new switch (Cisco Nexus 5548 with 2248 expanders) is barely over-subscribed - 40 Gbps bandwidth per 48 GbE ports. Switch bandwidth is 960 Gbps (it has 48 ports of 10 GbE).
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Gigabit Ethernet is dying - why doesn't the new Mini Pro have 10 GbE?
Obvious answer - because Apple wants to force T-Bolt on you. Industry standard 10 GbE networking would make T-Bolt less needed.