After the update About This Mac has strange storage information. iStat Menu information is incorrect also.
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sudo mdutil -E /
Just run this command in Terminal to reindex Spotlight and it will fix that.
Code:sudo mdutil -E /
I've already done that but will try again.
It can take an hour or so to complete, so make sure you wait until it is done.
Sounds like you might have bigger lurking issues of you need to issue commands into terminal manually to empty your trash.