A fresh install has no tangible benefits, in my experience. At best you will lose some obsolete files and gain a bit of space back, but that is hardly worth the effort. If your system is running fine then there is no reason to do it, other than a psychological one (clean slate and all). Spare yourself the time to set up your system again, it will take you a few hours at least, if not more. I did a clean install once and found that I had installed some useful tweaks over the years that I was not able to locate so easily anymore. Why abandon a system you are accustomed to when there is no good reason for doing it?
Besides, El Capitan will at least clean up your system folder a bit, because it moves out everything that doesn't belong there before it protects the system folder under System Integrity Protection.