When going from iOS 8 to iOS 9 did you do a full restore or did you update your device?
Also, may post a list of all your sources as well as packages currently installed.
I just updated, not a full restore which I thought I did when I jailbreak but I realized I just updated.
Repos: BigBoss, Cydia/Telesphoreo, ModMyi.com, Red Pand Dev Repo, ZodTTD
Packages: activator, andora theme, applist, appplus for snapchat, aveya, betterfiveicondock, bigBoss icon set, callbar, cydia installer, cydia substrate, cydia translations, frontcamUnMirror, instatools, itouch secure for ios 8, lyricForMusic, Patcyh, safehouse pro, seeblockedTweets, substrate safe mode, taig 8.1.3-8.X Untether, translucentCydia, transparentDock, upscale, winterboard, youtubed, zeppelin