Hi!
On my iMac with OSX 10.10.5 I've 1 Raid 5 drive (ThunderBay, using SoftRAID) via Thunderbolt and 2 USB drives. I do use CCC to clone my Raid 5 to both USB's.
When I drag a folder from my ThunderBay to Finders sidebar and I click it, it points correctly to the folder on the ThunderBay...