I'm having the same audio problem, but also having an issue where one movie will only play from the begining. If you try to scrub forward and start it, it will play for 1/2 a second and then pause. Anyone have that as well.
Ditto here. This playback/freezing 4.3 bug also presents on other iOS devices through the new home sharing feature. It's not on all my files, but about 50%. I think it's reasonable that it somehow connects back to the Dolby passthrough issue.
Also seeing a weird audio issue where if it does play, it loops the first second of audio over and over again while the video plays through. Ironically, it reminds me of a skipping LP.
When get home, I'm gonna try the above recomendation of turning off the Apple TV's DD option.