http://www.fcp.co/final-cut-pro/art...h-new-16-inch-macbook-pro-and-final-cut-pro-x
On fcp.com:
"So having convinced ourselves there really was a problem, we contacted Apple. They saw the issue first hand and they are already investigating."
Sounds hopeful.
The good news is that, because this issue is so widespread (well over 50% of 16-inch MBPs by the looks of it, if not all of them), Apple will surely have to address it.
Even if it's a hardware issue, it should at least be possible for them to work around it in software. I can work around it just by playing a long silent audio file in the background all the time to prevent the audio system shutting off. Gets rid of the pops completely.