I'm still trying to figure this out and am wondering why this card is interfering with my boot options...
My Setup:
Mac Pro 2008 (3.1)
32 GB RAM
PCI Slot 1: Graphics card, ATI Radeon 5770 HD
PCI Slot 2: Apricorn Velocity Duo (SATA0: SSD Mac OS 10.11.1 clean install. SATA1: SSD - I want to install Windows 10 here)
PCI Slot 3: empty
PCI Slot 4: USB 3 card
Bay 1: SSD Storage
Bay 2: SSD Windows 7
Bay 3: HD Time Machine
Bay 4: HD Storage
Bay 5: SSD Storage (SATA connector near DVD area)
I tried the Velocity Duo in PCI slot 1, 2, and 3. I tried SMC and PRAM resets. Never does the SSD on the Velocity card show up in the boot options screen. But it always shows up in System Prefs and allows me to select it there to boot up.
When the Velocity is in PCI slot 1 or 2 (pci 2.0 x 16) Windows 7 will not boot.
When the Velocity is in PCI slot 3, Windows 7 boots.
In conditions where Windows 7 doesn't boot, BootChamp can't even select it as a boot drive. Error, bless failed, etc.
If anyone has any suggestions or knowledge about what affects the boot process, I'd love to hear it.....