Remember, for any Apple product, the 2 main enemies of battery health are HEAT and draining the batts completely.
Thus, you always want some ventilation beneath the unit, and never leave it to cook in direct sunlight or in a hot car.
Draining the battery to a very low % will shorten its life as well. For best results, shut off your device before reaching, say, 10-20% battery life.
So your saying that the calibration technique described by apple (http://support.apple.com/kb/HT1490) for best performance is actually shortening its life?