No this message does not appear anymore after the clean install. I believe I have left it at the blinky cursor for at least five minutes, but I'll try again see if it progresses, but at this point I am thinking the windows install is incomplete. I am also considering throwing in a dedicated drive for windows, although I am unsure whether that will make much of a difference at this point.
AM
if that message no longer appears you should try those steps again and see if it works.