Under Lion and Mountain Lion your machine has a hidden, 650MB recovery partition with some troubleshooting tools and an installer that allows you to download the 4.7GB OS from Apple. Then you have the OS itself installed on the Macintosh HD partition.
SD only copies (clones) over the Macintosh HD partition and not the hidden recovery partition, where CCC does both.
So if you use SD, for example, to "clone" to a new drive you install you will not have a recovery partition on the new drive.
I see from your wording you mention cloning a drive, when that is not really what either app is doing. They are just cloning whatever partition you choose, typically Macintosh HD. CCC just has the added benefit of automatically recognizing the hidden recovery partition and copying it over also.