Did you put the SSD in a PCIe card to install? There is a difference between adding it by eSATA and with a PCIe.
The other thing that I would suggest is make sure that your fan and the fan cage is clean. My 3,1 is a dust magnet and keeping it clean will keep it cooler.
No, machine hasn't even arrived yet, it's due today, that's another thing on the list but I just want to get it and get it up running first before I spend any more cash.
Sure, I own a Hackintosh, too, the MacPro isn't mine.
For a lot of games, imho it still would be worth the money though to upgrade the GPU in a 3,1, since we aren't talking about some $1000 TitanX (my card was 190€ earlier this year). As I said, it heavily depends on what you want to do...
Well I guess whatever I put it in, it's going to be a step up from the stock ATi card, I'm really not looking for stellar GPU performance tbh.