I have cleaned the inside of the machine several times now.Either your MP fans were full of accumulated dust or you are purely referring to idle state. Under load the mini already screams where the MP doesn't even raise the fan RPM ...
Did you check your mini's fan for accumulated dust? Also, Apple is infamous for applying too much heat paste. Now if your mini would be affected from that and the heat paste has been drying out over the years, thus losing some cooling capability ...
To be fair: It's only speculation at this point. I'm not aware of related reports on the unibody minis, but Apple's notebooks had their share of that problem. Some reports even claimed to have seen lowered temps in the 10-20 degrees range, after renewing heat paste (including proper application).
I have not checked the thermal paste though. I wonder if mine was applied properly. I'll have to check this weekend.