The problem with restarts with some of the newer, larger capacity drives, appears to be related to some firmware setting of these drives (which as far as I know, can not be changed by the end-user as it is permanently set by the manufacturer), cMP 5,1's, and newer versions of OS X. One post suggests it's the TLER setting, though from what limited understanding I have of TLER, this setting is for error recovery and wouldn't be expected to affect restarts, but there may more involvement with TLER in warm starts that I'm not aware of.
Cold starts (starting up from a complete power down) works fine.
I only recently discovered this issue with new 6TB WD Blacks which was the first time I used these drives in my cMP. This also appears to affect 6TB Gold, but my 6TB Red and 6TB Red Pro's both work just fine with no problems with restarts:
Problems with WD 6TB Blacks in 5,1
There is a link in my thread to the supposed culprit.
I have 8TB Red's in my NAS but the next one I get I'll test in the cMP for this restart issue.