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If you are encoding with handbrake or any other software, and just use iflicks for tagging, just use the flatten to quicktime preset. It just copies the file with metadata. And should just take a minute +-

Best program i found so far is mkvtools, its maxing all my quad cores, and use much less time to encode then iflicks/handbrake.

And then i get good quality hd movies, instead of the divx/xvid crap
 
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