Just to announce that I with the recent developer version of macOS Sierra of 10.12.4 (both release 5 and 6) my glitches are gone; those that appear on reboot and also during boot.
I took the jump and activated my dormant developer account and proceeded to either get really mad or extremely happy.
Luckily for Apple and the people around me and also on the Internet I went on to become extremely happy. Also knowing that my graphics card is doing fine.
Yay!
Crosses fingers for all you in this thread.
Thank you SO MUCH for this! I read your post and decided to try the same with my Mac Pro (Late 2013) which was displaying a pink screen on startup when connected to my Asus monitor via HDMI.
The issue is now fixed and I now have the regular black boot screen. I hope it fixes this problem for everyone else!
Fingers crossed and best of luck to all!