@jackluke sadly it does the double chime since the first install of Mojave, so there was no software. Is it possible that an EFI update is included in the installer ?
Moreover, when I boot my MacBook Pro (7,1) I've noticed during half of loading the back is gray (cold) and suddenly (when the progress bar is slightly past 50%) it flash and become warm grey, yellowish. Maybe It's because it try to boot with this color but as it isn't supported by our EFI it reboot with the default one of our EFI.
It's just a theory by I had similar issue when I tested black boot logo on unsupported Mac for El Capitan / Sierra back then...
I don't know about double chime sound maybe your original EFI has been altered, but luckily it still powers on.
While regarding the flash/warmgrey/yellowish boot logo is simply routine depending from both patched GPUs FB/OpenGL kext and the /usr/standalone/i386/boot.efi required to boot from an unsupported Mac so nothing to worry about.
This "boot color tones morphing" is noticeable from stage2 Boot logo only from Macs with legacy grey screen and darker grey apple logo, while instead on Macs with black screen and white apple logo it happens anyway but can't be distinguished.
On any MacOS there two main EFI areas responsible of general power-on/booting:
- EFI hidden partition on disk needed for booting after the chime and the grey/black screen, it contains the boot loader and some preliminary kext's extensions, almost ever fixable from an external USB Installer/recovery through DiskUtility/Terminal;
- EFI Boot ROM on a microchip printed on the logic board, it contains the Mac firmware, responsible of machine power up and chime sound, fixable desoldering and soldering a new EFI CHIP, or using a SPI tool for reprogramming the bricked one
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