To get the install started, I did not modify any aspect of the installer partition except boot.efi (x3). However, after "preparing for installation" there is a reboot. I had to replace boot.efi (x1) in the .IABootFiles folder, and restart from the installer partition. After installation was complete, I had to replace boot.efi again in the (x2) usual places on the boot volume.
Here is my ioreg output from within El Capitan:
+-o MacPro2,1 <class IOPlatformExpertDevice, id 0x100000112, registered, matched, active, busy 0 (160582 ms), retain 30>
| {
| "compatible" = <"MacPro2,1">
| "version" = <"1.0">
| "board-id" = <"Mac-F42C88C8">
| "IOInterruptSpecifiers" = (<0900000005000000>)
| "IOPolledInterface" = "SMCPolledInterface is not serializable" | "IOInterruptControllers" = ("io-apic-0")
| "clock-frequency" = <00b5644f>
| "manufacturer" = <"Apple Computer, Inc.">
| "IOConsoleSecurityInterest" = "IOCommand is not serializable"
| "system-type" = <03>
| "product-name" = <"MacPro2,1">
| "model" = <"MacPro2,1">
| "name" = <"/">
| "IOBusyInterest" = "IOCommand is not serializable"
| }
Here is my ioreg output from within El Capitan:
+-o MacPro2,1 <class IOPlatformExpertDevice, id 0x100000112, registered, matched, active, busy 0 (160582 ms), retain 30>
| {
| "compatible" = <"MacPro2,1">
| "version" = <"1.0">
| "board-id" = <"Mac-F42C88C8">
| "IOInterruptSpecifiers" = (<0900000005000000>)
| "IOPolledInterface" = "SMCPolledInterface is not serializable" | "IOInterruptControllers" = ("io-apic-0")
| "clock-frequency" = <00b5644f>
| "manufacturer" = <"Apple Computer, Inc.">
| "IOConsoleSecurityInterest" = "IOCommand is not serializable"
| "system-type" = <03>
| "product-name" = <"MacPro2,1">
| "model" = <"MacPro2,1">
| "name" = <"/">
| "IOBusyInterest" = "IOCommand is not serializable"
| }