According to OWC if you short the cables to make the computer think that you don't have a HDD installed so you can install a non apple HDD, then the fans don't rev up, but they don't work at all according to the temperature. So the HDD may heat and cause damage to the computer. So this isn't a good idea.
Well thats not an issue with an SSD - and we've been using this method since 2009 with no problems.
Also you can install HDFanControl to do the monitoring over S.M.A.R.T if you want the HDD fan to do its job properly.
I'll be fitting the quietest, greenest, low power, low heat drive I can buy anyway as its all for media storage with dual SSD's running raid 0.
Looking at pictures its actually quite easy to do and I don't understand why there are pages and pages of confusion here regarding the fans. Its taken me 10 days to figure this simple "mythical" solution out because there is so many un-truths, mistakes, confusion and misunderstanding (from people who think they know what they are going on about, which is the worse kind) in this and other threads.
Looking at the cable in these photos and using Apples manual drawing
http://images.anandtech.com/reviews/mac/imac2011/_DSC6518.jpg
http://www.hardmac.com/news/2011/05...le-to-replace-the-hard-drive-of-the-2011-imac
The cable handily has all 7 pins on a separate wire. You can work out from the manual drawing which pin is number 2 and obviously 7 is at the opposite end. Just before they into the drive you can cut each of these cables and short them together. Job done - no Y splitter cable nonsense, no messing around, fit any drive you like. I wouldn't bother worrying about the fans if you're swapping the main HD drive out for an SSD. They don't give off any heat - I had dual raid 0 SSD's in my 2009 iMac and that ran (and still does) perfectly for two years.
Ill probably buy HDTempControl for the green drive i fit into the main bay but ill do a stress test on the drive and see what the heat gains are, as it won't be getting used much - if its idle and medium use settings are not enough to raise the fan above 1000rpm anyway I'll probably disabled HDDTempControl so there isn't another minor background process checking.
Hope that helps - i'll make a very clear post about HD upgrading after this - maybe worth making a sticky so others don't get so confused in the future. Googling brings up loads of out of date blogs from May saying its impossible to change the main drive, there are also lots of people telling lies (or hiding the truth) for commercial interest, people like OWC who want to offer a turnkey solution and make money from it - and then there are threads with lots of confusion in. It doesn't help someone who comes into it with very little knowledge.