Same Intel Tylersburg chipset features. The only difference is a revision to Apple's System Management Controller.
Yeah, not to beat you over the head, IowaLynn, but I brought out my block diagrams to compare and confirm as well. The 3rd and 4th slots ARE a bit different in that they share a PCIe switch back to the North Bridge controller, whereas Slots 1 & 2 each have their own dedicated links. But that's true for all 2009-2012 systems (and I believe 2008s as well, but I can't find a block diagram to verify that).
-Fred