Well
same here, plus I'm on 10.11.1 (15B17c) with disabled csrutil (SIP).
The steps I've done:
1) Replaced the previous boot.efi on Recovery HD partition with the one
@splifingate provided.
2) Rebooted to Recovery, run Terminal, "csrutil disable", DISABLED!
3) Rebooted to El Capitan with the previous boot.efi, tested and said it was still enabled, then I checked the App Store for updates, installed 10.11.1, iTunes 12.3 and rebooted to Yosemite.
4) Replaced on El Capitan the boot.efi to match the same as in Recovery HD.
5) Rebooted in El Capitan, installation progress of the update completed, csrutil was there DISABLED too!!!
So, I think we're getting close now to a final version thanks to Tiamo, Pike,
@Hennesie2000,
@PeterHolbrook,
@mikeboss and of course
@splifingate for the last release. Thanks to all for the hard work guys!
Now, the last step is to disable verbose on boot.efi and patch the script to auto replace the boot.efi on the respective locations. I believe in this point, the Recovery HD partition must be added to the script for more simplicity to those who don't have much time to spend on Terminal or the knowledge/patience.
Cheers to all and thanks again!