How much RAM do you have in each machine - are there any 512mb chips in any of them? As noted many times, 12gb of RAM is needed and 512 chips cause problems. If RAM is OK then swapping the disk is a good way to test - I think 12gb is only needed for the install but you can never have too much - you could always add more memory from the working Mac to the other and see what happens when you try to install - or install on the 1.1 disk via the 2.1 by swapping the disk for the install or by Target Disk mode.
I've seen a number of posts just lately expressing concern over the memory requirement and my use of the phrase "possible memory leak". Let me see if I can put people's minds at ease...
The requirement for 12GB of RAM is evidential, most users have found that the install process as developed for the pikify3.1 scripting (by me
) requires a minimum of 12GB of RAM (although I note
@dfritchie says s/he managed it with 10GB).
12GB only applies for the pikify3.1 method of installing. I have tried to track down what is consuming the memory but I haven't been able to put my finger on it. I have suggested that maybe it is a "memory leak" but that hypothesis remains unproven.
The other possibility is that the pikify method uses the Apple createinstallmedia tool (which is designed create install media for read-only media such as DVD). When this method boots up, it assumes read-only media, so it creates a number of RAM-disks to boot from. It runs the install process from these RAM-disks. One of the steps in the Installation process logs this line in the log file "Activated virtual memory backing store at mount point '/Volumes/El Capitan'". Now virtual memory is usually swap space to the hard disk, but for this installer environment the disks are all RAM-based, therefore it is entirely possible that as the installer unpacks the data onto the destination HDD, it is also using the backing store (which is in RAM). Again, this is just a hypothesis and I have not proved it.
Here is a graph of free memory. The three lines represent 3 installation runs, the top 2 lines represent 2 different versions of pikify3.1 run with 32GB RAM installed, the third line represents a failed install when the machine had 8GB RAM installed.
Hopefully the picture says it all. As the installation proceeds, the available RAM decreases. Not a problem at 32GBs installed, but causes the 8GB run to fail early because available RAM space dropped to zero.
That said, you do not need 12GB of RAM if you use "the other machine" method. If you use another "supported" machine with your MacPro disk drive attached (either from Target Disk mode, or temporarily in an external drive enclosure, or temporarily fitted into the chassis of a newer MacPro 3.1 or higher), then a minimum of 2GB of RAM is suggested for the install.
It's worth noting that "the other machine method" does not require the use of the pikify3.1 built media. You can run the El Capitan installer directly. Once it completes remember to manually copy the Pike boot.efi files into place before you return the HDD to the MacPro....
Once you have the OS installed onto your disk, using the Pike boot.efi files, and you boot your MacPro from it, most users have reported a great experience.
However, a number of users have reported numerous crashes and difficulties. Empirically it has been discovered that the combination of El Capitan, 32-bit-efi machines, and 512MB original DIMMs seems to be the common factor. Every user who has reported kernel panics has been advised to buy new larger capacity RAM DIMMs, and has subsequently reported back that their system has stabilised. The recommendation is to purchase 2GB or 4GB DIMMs in pairs, as many as you can afford.
Personally, I have 8 x 4GB DIMMs, some of which have Apple-style heat sinks, and some of which have the more typical flat heat spreaders. I keep my Mac clean, so airflow remains good. Like everyone, I was concerned about the heat profile of the heat-spreader DIMMs, so for the first few months I was constantly watching the reported temps. In my experience there is very little temperature difference (reported), and I have long since stopped worrying about it. My MacPro 2,1(1,1) was rock solid at Yosemite, and has been rock solid under El Capitan.
There is NO evidence of a memory leak under normal operation.
I hope that helps put some context around it, and helps calm people's fears!