Thanks for the suggestion. I had reset the SMC and NVRAM, but that didn’t help either. The machine has 16GB of RAM and an SSD. Spotlight is not indexing as far as I can tell.The slowdown in the progress bar at bootup is probably normal. Happens on my machine, 2012 non-retina, as well.
I don't have issues with the long delayed bouncing, but it sounds like you could still be experiencing the general slowness that occurs from indexing and other processes that run after a fresh update/install. If you don't have 16GB of RAM and an SSD instead of a spinning disk, that will contribute to slowness with the newer OSes as well.
If you haven't reset NVRAM and the SMC you might want to do that also. Old firmware could be an issue as well if the machine never ran the last Apple supported version of MacOS.