A Thermal Core redesign to support 1000W TDP is absolutely feasible w/o formfactor change (please don't convert it on a Thermodynamic class, I have a lot to teach you on thermodynamics), either from a material switch from Aluminum to copper, even to Heat pipes and Increased fan Speed, also switching the PSU to another beefier is feasible I've quoted few PSU for Rack Servers even smaller then the one on the mac pro and capable to deliver 1200W.
I'm not so sure of that, because the thermal core design doesn't seem to be able to handle the current power supply...
Reports of the nMP GPU dying from thermal failure are legion. I can't imagine that a material change is going to suddenly allow it to cool an even bigger 1200w power supply, unless you cranked up the fan speed to the point that it sounded like a turbine.
And any large PSU I have ever seen in a rack mount unit has a very loud high speed fan (often multiple) cooling the system.
Apple deserves some credit for trying something new, but it's a poor design and it's time to move on.